3U2S	Immune System	date	Oct 04, 2011
title	Crystal Structure Of Pg9 Fab In Complex With V1v2 Region Fro Strain Zm109
authors	J.S.Mclellan, M.Pancera, P.D.Kwong
compound		source
Molecule: Pg9 Heavy Chain Chain: H, A Fragment: Antigen-Binding Fragment Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pvrc8400
Molecule: Pg9 Light Chain Chain: L, B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pvrc8400
Molecule: Envelope Glycoprotein Gp120 Chain: G, C Fragment: V1v2 Region Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Strain: Zm109 Gene: Env Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Gnti Expression_system_vector_type: Plasmid Expression_system_plasmid: Pvrc8400
symmetry	Space Group: P 1 21 1	R_factor 0.178 R_Free 0.205
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.465 86.565 94.879 90.00 92.08 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	BMA, BU3, MAN, NAG, PCA, SO4, TYS	enzyme
Gene Ontology	Chain Function Process Component C, G
Primary reference	Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9., McLellan JS, Pancera M, Carrico C, Gorman J, Julien JP, Khayat R, Louder R, Pejchal R, Sastry M, Dai K, O'Dell S, Patel N, Shahzad-Ul-Hussan S, Yang Y, Zhang B, Zhou T, Zhu J, Boyington JC, Chuang GY, Diwanji D, Georgiev I, Do Kwon Y, Lee D, Louder MK, Moquin S, Schmidt SD, Yang ZY, Bonsignori M, Crump JA, Kapiga SH, Sam NE, Haynes BF, Burton DR, Koff WC, Walker LM, Phogat S, Wyatt R, Orwenyo J, Wang LX, Arthos J, Bewley CA, Mascola JR, Nabel GJ, Schief WR, Ward AB, Wilson IA, Kwong PD, Nature. 2011 Nov 23. doi: 10.1038/nature10696. PMID:22113616

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (513 Kb) [Save to disk] Biological Unit Coordinates (3u2s.pdb1.gz) 254 Kb Biological Unit Coordinates (3u2s.pdb2.gz) 254 Kb LPC: Ligand-Protein Contacts for 3U2S CSU: Contacts of Structural Units for 3U2S Structure Factors (992 Kb) Retrieve 3U2S in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3U2S from S2C, [Save to disk] Re-refined 3u2s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3U2S in 3D

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Visual 3D analysis of 3U2S

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3U2S, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3u2s_A] [3u2s_C] [3u2s_B] [3u2s_G] [3u2s] [3u2s_H] [3u2s_L] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3U2S: [IG_like] [IGv ] by SMART

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