3U33 Oxidoreductase date Oct 04, 2011
title Crystal Structure Of The E. Coli Adaptive Response Protein A Space Group P3(2)
authors C.Wong, M.Jost, C.L.Drennan
compound source
Molecule: Putative Acyl-Coa Dehydrogenase Aidb
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Adaptive Response Protein Aidb
Ec: 1.3.99.-
Engineered: Yes
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Strain: Ab1157
Gene: Aidb, B4187, Jw5867
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 32
R_factor 0.205 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
179.720 179.720 204.237 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand CL, FAD enzyme Oxidoreductase E.C.1.3.99 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceFlavin-Induced Oligomerization in Escherichia coli Adaptive Response Protein AidB., Hamill MJ, Jost M, Wong C, Elliott SJ, Drennan CL, Biochemistry. 2011 Oct 27. PMID:22004173
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2060 Kb) [Save to disk]
  • Biological Unit Coordinates (3u33.pdb1.gz) 689 Kb
  • Biological Unit Coordinates (3u33.pdb2.gz) 698 Kb
  • Biological Unit Coordinates (3u33.pdb3.gz) 683 Kb
  • LPC: Ligand-Protein Contacts for 3U33
  • CSU: Contacts of Structural Units for 3U33
  • Structure Factors (2237 Kb)
  • Retrieve 3U33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U33 from S2C, [Save to disk]
  • Re-refined 3u33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U33
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3U33, from MSDmotif at EBI
  • Fold representative 3u33 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u33_L] [3u33_F] [3u33_A] [3u33_B] [3u33_D] [3u33_G] [3u33_K] [3u33_I] [3u33_E] [3u33_C] [3u33] [3u33_J] [3u33_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3U33
  • Community annotation for 3U33 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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