OCA Atlas for 3U3G

3U3G

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CL, UNL

enzyme

note

3U3G is a representative structure

Gene
Ontology

Chain	Function	Process	Component
C, A, D, B	RNA-DNA hybrid ribonuclease ...

Primary reference

Activity, stability, and structure of metagenome-derived LC11-RNase H1, a homolog of Sulfolobus tokodaii RNase H1., Nguyen TN, Angkawidjaja C, Kanaya E, Koga Y, Takano K, Kanaya S, Protein Sci. 2012 Apr;21(4):553-61. doi: 10.1002/pro.2043. Epub 2012 Mar 2. PMID:22389131

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]

Biological Unit Coordinates (3u3g.pdb1.gz) 27 Kb

Biological Unit Coordinates (3u3g.pdb2.gz) 28 Kb

Biological Unit Coordinates (3u3g.pdb3.gz) 28 Kb

Biological Unit Coordinates (3u3g.pdb4.gz) 28 Kb

LPC: Ligand-Protein Contacts for 3U3G

CSU: Contacts of Structural Units for 3U3G

Structure Factors (1660 Kb)

Retrieve 3U3G in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3U3G from S2C, [Save to disk]

Re-refined 3u3g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3U3G in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3u3g] [3u3g_A] [3u3g_B] [3u3g_C] [3u3g_D]

SWISS-PROT database:

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]