3U3H Isomerase date Oct 05, 2011
title X-Ray Crystallographic Analysis Of D-Xylose Isomerase-Cataly Isomerization Of (R)-Glyceraldehyde
authors K.N.Allen, N.R.Silvaggi, M.M.Toteva, J.P.Richard
compound source
Molecule: Xylose Isomerase
Chain: A
Ec: 5.3.1.5
Organism_scientific: Streptomyces Rubiginosus
Organism_taxid: 1929
symmetry Space Group: I 2 2 2
R_factor 0.116 R_Free 0.125
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.651 98.148 102.597 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.97 Å
ligand 03W, FMT, MG, MRD enzyme Isomerase E.C.5.3.1.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBinding Energy and Catalysis by D-Xylose Isomerase: Kinetic, Product and X-Ray Crystallographic Analysis of Enzyme-Catalyzed Isomerization of (R)-Glyceraldehyde., Toteva MM, Silvaggi NR, Allen KN, Richard JP, Biochemistry. 2011 Oct 13. PMID:21995300
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (3u3h.pdb1.gz) 809 Kb
  • LPC: Ligand-Protein Contacts for 3U3H
  • CSU: Contacts of Structural Units for 3U3H
  • Structure Factors (1918 Kb)
  • Retrieve 3U3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U3H from S2C, [Save to disk]
  • Re-refined 3u3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U3H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3U3H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u3h] [3u3h_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3U3H
  • Community annotation for 3U3H at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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