3U3S Apoptosis date Oct 06, 2011
title The S-Sad Phased Crystal Structure Of The Ecto-Domain Of Dea Receptor 6 (Dr6)
authors H.Ru, L.X.Zhao, W.Ding, L.Y.Jiao, N.Shaw, L.G.Zhang, L.W.Hung, N.Ma S.Wakatsuki, Z.J.Liu
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: A
Fragment: Cysteine Rich Domain
Synonym: Death Receptor 6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf21, Dr6, Unq437pro868
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.197 R_Free 0.260
length a length b length c angle alpha angle beta angle gamma
77.674 77.674 186.800 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
Primary referenceS-SAD phasing study of death receptor 6 and its solution conformation revealed by SAXS., Ru H, Zhao L, Ding W, Jiao L, Shaw N, Liang W, Zhang L, Hung LW, Matsugaki N, Wakatsuki S, Liu ZJ, Acta Crystallogr D Biol Crystallogr. 2012 May;68(Pt 5):521-30. Epub 2012 Apr 17. PMID:22525750
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (3u3s.pdb1.gz) 57 Kb
  • CSU: Contacts of Structural Units for 3U3S
  • Structure Factors (141 Kb)
  • Retrieve 3U3S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U3S from S2C, [Save to disk]
  • Re-refined 3u3s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U3S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U3S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3U3S, from MSDmotif at EBI
  • Fold representative 3u3s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u3s] [3u3s_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3U3S: [Ephrin_rec_like] [TNFR ] by SMART
  • Other resources with information on 3U3S
  • Community annotation for 3U3S at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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