3U3T Apoptosis date Oct 06, 2011
title The S-Sad Phased Crystal Structure Of The Ecto-Domain Of Dea Receptor 6 (Dr6)
authors H.Ru, L.X.Zhao, W.Ding, L.Y.Jiao, N.Shaw, L.G.Zhang, L.W.Hung, N.Ma S.Wakatsuki, Z.J.Liu
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: A
Fragment: Cysteine Rich Domain
Synonym: Death Receptor 6
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf21, Dr6, Unq437pro868
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.208 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.655 77.655 186.459 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.21 Å
Primary referenceS-SAD phasing study of death receptor 6 and its solution conformation revealed by SAXS., Ru H, Zhao L, Ding W, Jiao L, Shaw N, Liang W, Zhang L, Hung LW, Matsugaki N, Wakatsuki S, Liu ZJ, Acta Crystallogr D Biol Crystallogr. 2012 May;68(Pt 5):521-30. Epub 2012 Apr 17. PMID:22525750
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (3u3t.pdb1.gz) 51 Kb
  • CSU: Contacts of Structural Units for 3U3T
  • Structure Factors (86 Kb)
  • Retrieve 3U3T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U3T from S2C, [Save to disk]
  • Re-refined 3u3t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3U3T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3U3T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3U3T, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u3t_A] [3u3t]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3U3T: [Ephrin_rec_like] [TNFR ] by SMART
    • Other resources with information on 3U3T
  • Community annotation for 3U3T at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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