3U5V Transcription date Oct 11, 2011
title Crystal Structure Of Max-E47
authors A.Guarne, F.Ahmadpour, M.Gloyd
compound source
Molecule: Protein Max, Transcription Factor E2-Alpha Chimer
Chain: A
Fragment: See Remark 999
Synonym: Myc-Associated Factor X, Myc-Binding Novel Hlhlz Protein Myn, Immunoglobulin Enhancer-Binding Factor E47, Cl Basic Helix-Loop-Helix Protein 21, Bhlhb21, Immunoglobulin Transcription Factor 1, Kappa-E2-Binding Factor, Transcript 3, Tcf-3, Transcription Factor Itf-1;
Engineered: Yes
Organism_scientific: Mus Musculus, Homo Sapiens
Organism_common: Mouse, Human
Organism_taxid: 10090, 9606
Gene: Max, Myn, Bhlhb21, E2a, Itf1, Tcf3
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a+
symmetry Space Group: I 21 21 21
R_factor 0.207 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.480 49.466 74.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand NO3 enzyme
note 3U5V is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the minimalist max-e47 protein chimera., Ahmadpour F, Ghirlando R, De Jong AT, Gloyd M, Shin JA, Guarne A, PLoS One. 2012;7(2):e32136. Epub 2012 Feb 28. PMID:22389683
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (3u5v.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3U5V
  • CSU: Contacts of Structural Units for 3U5V
  • Structure Factors (183 Kb)
  • Retrieve 3U5V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U5V from S2C, [Save to disk]
  • Re-refined 3u5v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U5V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U5V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3U5V, from MSDmotif at EBI
  • Fold representative 3u5v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u5v_A] [3u5v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3U5V: [HLH ] by SMART
  • Other resources with information on 3U5V
  • Community annotation for 3U5V at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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