3U71 Hydrolase date Oct 13, 2011
title Crystal Structure Analysis Of South African Wild Type Hiv-1 Protease
authors P.Naicker, S.Fanucchi, I.A.Achilonu, M.A.Fernandes, H.W.Dirr, Y.S
compound source
Molecule: Hiv-1 Protease
Chain: A
Fragment: Unp Residues 1-99
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11b
symmetry Space Group: P 41 21 2
R_factor 0.217 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.928 45.928 99.960 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.72 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (3u71.pdb1.gz) 61 Kb
  • CSU: Contacts of Structural Units for 3U71
  • Structure Factors (48 Kb)
  • Retrieve 3U71 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U71 from S2C, [Save to disk]
  • Re-refined 3u71 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U71 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U71
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3U71, from MSDmotif at EBI
  • Fold representative 3u71 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u71_A] [3u71]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3U71
  • Community annotation for 3U71 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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