3U73 Hydrolase Hydrolase Receptor date Oct 13, 2011
title Crystal Structure Of Stabilized Human Upar Mutant In Complex
authors M.D.Huang, X.Xu, C.Yuan
compound source
Molecule: Urokinase Plasminogen Activator Surface Receptor
Chain: U
Synonym: U-Par, Upar, Monocyte Activation Antigen Mo3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mo3, Plaur, Upar
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_cell_line: S2 Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmtbip

Molecule: Urokinase-Type Plasminogen Activator
Chain: A
Synonym: U-Plasminogen Activator, Upa, Urokinase-Type Plasm Activator Long Chain A, Urokinase-Type Plasminogen Activato Chain A, Urokinase-Type Plasminogen Activator Chain B;
Ec: 3.4.21.73
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plau
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_cell_line: S2 Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmtbip
symmetry Space Group: P 31 2 1
R_factor 0.216 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.896 130.896 105.315 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.19 Å
ligand MAN, NAG enzyme Hydrolase E.C.3.4.21.73 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


U


Primary referenceCrystal structure of the urokinase receptor in a ligand-free form., Xu X, Gardsvoll H, Yuan C, Lin L, Ploug M, Huang M, J Mol Biol. 2012 Mar 9;416(5):629-41. Epub 2012 Jan 21. PMID:22285761
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (3u73.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 3U73
  • CSU: Contacts of Structural Units for 3U73
  • Structure Factors (250 Kb)
  • Retrieve 3U73 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U73 from S2C, [Save to disk]
  • Re-refined 3u73 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U73 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U73
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3U73, from MSDmotif at EBI
  • Fold representative 3u73 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u73_U] [3u73] [3u73_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3U73: [EGF] [KR] [LU ] by SMART
  • Other resources with information on 3U73
  • Community annotation for 3U73 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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