3U78 E67-2 selectively inhibits KIAA1718, a human histone H3 lysine 9 Jumonji demethylase date 2011-10-13
authors Upadhyay, A.K., Cheng, X.
compound source
symmetry
R_factor
R_Free 0.2645
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.69
ligand AKG, CL, E67, EDO, NI, SO4 enzyme
Primary referenceAn Analog of BIX-01294 Selectively Inhibits a Family of Histone H3 Lysine 9 Jumonji Demethylases., Upadhyay AK, Rotili D, Han JW, Hu R, Chang Y, Labella D, Zhang X, Yoon YS, Mai A, Cheng X, J Mol Biol. 2011 Dec 29. PMID:22227394
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3u78.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 3U78
  • CSU: Contacts of Structural Units for 3U78
  • Structure Factors (89 Kb)
  • Retrieve 3U78 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U78 from S2C, [Save to disk]
  • Re-refined 3u78 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3U78
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3U78, from MSDmotif at EBI
  • Fold representative 3u78 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u78_A] [3u78]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3U78: [JmjC ] by SMART
    • Other resources with information on 3U78
  • Community annotation for 3U78 at PDBWiki (http://pdbwiki.org)
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