3U7D	Protein Binding	date	Oct 13, 2011
title	Crystal Structure Of The Krit1ccm1 Ferm Domain In Complex W Heart Of Glass (Heg1) Cytoplasmic Tail
authors	A.R.Gingras, J.J.Liu, M.H.Ginsberg, Assembly, Dynamics And Evolu Cell-Cell And Cell-Matrix Adhesions (Cellmat)
compound		source
Molecule: Krev Interaction Trapped Protein 1 Chain: A, C Fragment: Ferm Domain, Residues 417-736 Synonym: Krev Interaction Trapped 1, Cerebral Cavernous Mal Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ccm1, Cerebral Cavernous Malformations 1 Protein, Kre Interaction Trapped Protein 1 Or Ccm1, Krit1; Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pleics-07
Molecule: Protein Heg Homolog 1 Chain: B, D Fragment: C-Terminal Cytoplasmic Tail, Residues 1356-1381 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Synthetic Peptide
symmetry	Space Group: P 1 21 1	R_factor 0.234 R_Free 0.309
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.050 76.820 79.180 90.00 113.62 90.00
method	X-Ray Diffraction	resolution	2.49 Å
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Structural basis of the junctional anchorage of the cerebral cavernous malformations complex., Gingras AR, Liu JJ, Ginsberg MH, J Cell Biol. 2012 Oct 1;199(1):39-48. doi: 10.1083/jcb.201205109. Epub 2012 Sep, 24. PMID:23007647

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk] Biological Unit Coordinates (3u7d.pdb1.gz) 52 Kb Biological Unit Coordinates (3u7d.pdb2.gz) 52 Kb CSU: Contacts of Structural Units for 3U7D Structure Factors (421 Kb) Retrieve 3U7D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3U7D from S2C, [Save to disk] Re-refined 3u7d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3U7D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3U7D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3U7D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3u7d] [3u7d_A] [3u7d_D] [3u7d_B] [3u7d_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3U7D: [B41 ] by SMART

Other resources with information on 3U7D

Community annotation for 3U7D at PDBWiki (http://pdbwiki.org)

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