3U7M Hydrolase Hydrolase Inhibitor date Oct 14, 2011
title Crystal Structures Of The Staphylococcus Aureus Peptide Defo Complex With Two Classes Of New Inhibitors
authors S.J.Lee, S.J.Lee, S.K.Lee, H.J.Yoon, H.H.Lee, K.K.Kim, B.J.Lee, S
compound source
Molecule: Peptide Deformylase
Chain: A
Synonym: Pdf, Polypeptide Deformylase
Ec: 3.5.1.88
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93062
Strain: Col
Gene: Sacol1100
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21a(+)
symmetry Space Group: C 2 2 21
R_factor 0.195 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.580 119.703 47.268 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand CSD, FHF, ZN enzyme Hydrolase E.C.3.5.1.88 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3u7m.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 3U7M
  • CSU: Contacts of Structural Units for 3U7M
  • Structure Factors (427 Kb)
  • Retrieve 3U7M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U7M from S2C, [Save to disk]
  • Re-refined 3u7m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3U7M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3U7M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3U7M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u7m_A] [3u7m]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3U7M
  • Community annotation for 3U7M at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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