3U7U Transferase Transferase Regulator date Oct 14, 2011
title Crystal Structure Of Extracellular Region Of Human Epidermal Factor Receptor 4 In Complex With Neuregulin-1 Beta
authors P.Liu, T.E.Cleveland Iv, S.Bouyain, P.A.Longo, D.J.Leahy
compound source
Molecule: Receptor Tyrosine-Protein Kinase Erbb-4
Chain: A, B, C, D, E, F
Fragment: Extracellular Region (Unp Residues 26-640)
Synonym: Proto-Oncogene-Like Protein C-Erbb-4, Tyrosine Kin Cell Surface Receptor Her4, P180erbb4, Erbb4 Intracellular 4icd, E4icd, S80her4;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Erbb4, Her4
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_strain: Lec 3.2.8.1
Expression_system_plasmid: Psghv0

Molecule: Neuregulin 1
Chain: G, H, I, J, K, L
Fragment: Egf-Like Domain (Unp Residues 230-284)
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nrg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32
symmetry Space Group: P 1 21 1
R_factor 0.190 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.730 223.510 146.920 90.00 99.72 90.00
method X-Ray Diffractionresolution 3.03 Å
ligand NAG enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, C, D


J, K, H, I, G, L


Primary referenceA single ligand is sufficient to activate EGFR dimers., Liu P, Cleveland TE 4th, Bouyain S, Byrne PO, Longo PA, Leahy DJ, Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):10861-6. Epub 2012 Jun 14. PMID:22699492
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1277 Kb) [Save to disk]
  • Biological Unit Coordinates (3u7u.pdb1.gz) 208 Kb
  • Biological Unit Coordinates (3u7u.pdb2.gz) 223 Kb
  • Biological Unit Coordinates (3u7u.pdb3.gz) 220 Kb
  • Biological Unit Coordinates (3u7u.pdb4.gz) 223 Kb
  • Biological Unit Coordinates (3u7u.pdb5.gz) 220 Kb
  • Biological Unit Coordinates (3u7u.pdb6.gz) 219 Kb
  • LPC: Ligand-Protein Contacts for 3U7U
  • CSU: Contacts of Structural Units for 3U7U
  • Structure Factors (1410 Kb)
  • Retrieve 3U7U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U7U from S2C, [Save to disk]
  • Re-refined 3u7u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U7U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U7U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3U7U, from MSDmotif at EBI
  • Fold representative 3u7u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u7u_I] [3u7u_A] [3u7u_D] [3u7u] [3u7u_K] [3u7u_F] [3u7u_C] [3u7u_E] [3u7u_J] [3u7u_H] [3u7u_B] [3u7u_L] [3u7u_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3U7U: [EGF] [FU ] by SMART
  • Other resources with information on 3U7U
  • Community annotation for 3U7U at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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