3U85 Transcription date Oct 15, 2011
title Crystal Structure Of Human Menin In Complex With Mll1
authors J.Huang, B.Wan, M.Lei
compound source
Molecule: Menin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Men1, Scg2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid

Molecule: Histone-Lysine N-Methyltransferase 2a
Chain: B
Synonym: Lysine N-Methyltransferase 2a,All-1,Cxxc-Type Zinc Protein 7,Myeloidlymphoid Or Mixed-Lineage Leukemia,Myeloi Or Mixed-Lineage Leukemia Protein 1,Trithorax-Like Protein, Finger Protein Hrx;
Ec: 2.1.1.43
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kmt2a, All1, Cxxc7, Hrx, Htrx, Mll, Mll1, Trx1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 41 21 2
R_factor 0.220 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.205 141.205 93.550 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe same pocket in menin binds both MLL and JUND but has opposite effects on transcription., Huang J, Gurung B, Wan B, Matkar S, Veniaminova NA, Wan K, Merchant JL, Hua X, Lei M, Nature. 2012 Feb 12;482(7386):542-6. doi: 10.1038/nature10806. PMID:22327296
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3u85.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (3u85.pdb2.gz) 155 Kb
  • CSU: Contacts of Structural Units for 3U85
  • Structure Factors (113 Kb)
  • Retrieve 3U85 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U85 from S2C, [Save to disk]
  • Re-refined 3u85 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U85 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U85
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3U85, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u85_B] [3u85] [3u85_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3U85
  • Community annotation for 3U85 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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