3U8H Hydrolase date Oct 17, 2011
title Functionally Selective Inhibition Of Group Iia Phospholipase Reveals A Role For Vimentin In Regulating Arachidonic Acid
authors L.K.Lee, K.J.Bryant, R.Bouveret, P.W.Lei, A.P.Duff, S.J.Harrop, E R.P.Harvey, M.H.Gelb, P.P.Gray, P.M.Curmi, A.M.Cunningham, W.B.C K.F.Scott
compound source
Molecule: Phospholipase A2, Membrane Associated
Chain: A, B
Synonym: Giic Spla2, Group Iia Phospholipase A2, Non-Pancre Secretory Phospholipase A2, Nps-Pla2, Phosphatidylcholine 2 Acylhydrolase 2a;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pla2g2a, Pla2b, Pla2l, Rasf-A
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
symmetry Space Group: P 31
R_factor 0.192 R_Free 0.225
length a length b length c angle alpha angle beta angle gamma
74.792 74.792 49.926 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand BHP, CA, CL enzyme Hydrolase E.C. BRENDA
A, B

Primary referenceSelective Inhibition of Human Group IIA-secreted Phospholipase A2 (hGIIA) Signaling Reveals Arachidonic Acid Metabolism Is Associated with Colocalization of hGIIA to Vimentin in Rheumatoid Synoviocytes., Lee LK, Bryant KJ, Bouveret R, Lei PW, Duff AP, Harrop SJ, Huang EP, Harvey RP, Gelb MH, Gray PP, Curmi PM, Cunningham AM, Church WB, Scott KF, J Biol Chem. 2013 May 24;288(21):15269-79. doi: 10.1074/jbc.M112.397893. Epub, 2013 Mar 12. PMID:23482564
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3u8h.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3u8h.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (3u8h.pdb3.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 3U8H
  • CSU: Contacts of Structural Units for 3U8H
  • Structure Factors (200 Kb)
  • Retrieve 3U8H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U8H from S2C, [Save to disk]
  • Re-refined 3u8h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U8H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U8H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3U8H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u8h] [3u8h_A] [3u8h_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3U8H: [PA2c ] by SMART
  • Other resources with information on 3U8H
  • Community annotation for 3U8H at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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