3U8T	Hydrolase Hydrolase Inhibitor	date	Oct 17, 2011
title	Human Thrombin Complexed With D-Phe-Pro-D-Arg-Cys
authors	A.C.Figueiredo, C.C.Clement, M.Philipp, P.J.B.Pereira
compound		source
Molecule: Thrombin Light Chain Chain: L Synonym: Prothrombin Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Thrombin Heavy Chain Chain: H Synonym: Prothrombin Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: D-Phe-Pro-D-Arg-Cys Direct Thrombin Inhibitor Chain: I Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 21 21 21	R_factor 0.153 R_Free 0.195
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.800 77.100 83.430 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.86 Å
ligand	CL, DAR, DPN, IOD, MPD, NA, NAG, NH2	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
Gene Ontology	Chain Function Process Component H L
Primary reference	Rational design and characterization of d-phe-pro-d-arg-derived direct thrombin inhibitors., Figueiredo AC, Clement CC, Zakia S, Gingold J, Philipp M, Pereira PJ, PLoS One. 2012;7(3):e34354. Epub 2012 Mar 23. PMID:22457833

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (3u8t.pdb1.gz) 99 Kb LPC: Ligand-Protein Contacts for 3U8T CSU: Contacts of Structural Units for 3U8T Structure Factors (1537 Kb) Retrieve 3U8T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3U8T from S2C, [Save to disk] Re-refined 3u8t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3U8T in 3D

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Visual 3D analysis of 3U8T

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3U8T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3u8t_H] [3u8t_I] [3u8t_L] [3u8t] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3U8T: [Tryp_SPc ] by SMART

Other resources with information on 3U8T

Community annotation for 3U8T at PDBWiki (http://pdbwiki.org)

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