3U9Q	Transcription	date	Oct 19, 2011
title	Ligand Binding Domain Of Ppargamma Complexed With Decanoic A Pgc-1a Peptide
authors	V.R.Malapaka, H.E.Xu
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A Fragment: Ligand Binding Domain, Unp Residues 236-504 Synonym: Ppar-Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr1c3, Pparg Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Pgc-1a Peptide Chain: B Fragment: Peptide, Unp Residues 142-150 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Synthetic Peptide
symmetry	Space Group: P 1 21 1	R_factor 0.183 R_Free 0.222
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.726 54.346 66.809 90.00 107.52 90.00
method	X-Ray Diffraction	resolution	1.52 Å
ligand	DKA	enzyme
note	3U9Q is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Identification and mechanism of a ten carbon fatty acid as a modulating ligand of peroxisome proliferator activated receptors., Malapaka RR, Khoo SK, Zhang J, Choi JH, Zhou XE, Xu Y, Gong Y, Li J, Yong EL, Chalmers MJ, Chang L, Resau JH, Griffin PR, Chen YE, Xu HE, J Biol Chem. 2011 Oct 28. PMID:22039047

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk] Biological Unit Coordinates (3u9q.pdb1.gz) 87 Kb LPC: Ligand-Protein Contacts for 3U9Q CSU: Contacts of Structural Units for 3U9Q Structure Factors (589 Kb) Retrieve 3U9Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3U9Q from S2C, [Save to disk] Re-refined 3u9q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3U9Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3U9Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3U9Q, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3u9q_B] [3u9q] [3u9q_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3U9Q: [HOLI ] by SMART

Other resources with information on 3U9Q

Community annotation for 3U9Q at PDBWiki (http://pdbwiki.org)

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