3UCG Rna Binding Protein date Oct 26, 2011
title Crystal Structure Of A Rna Binding Domain Of Polyadenylate-B Protein (Pabpn1) From Homo Sapiens At 1.95 A Resolution
authors Joint Center For Structural Genomics (Jcsg), Partnership For Biology (Tcell)
compound source
Molecule: Polyadenylate-Binding Protein 2
Chain: A
Fragment: Rna Binding Domain
Synonym: Pabp-2, Poly(A)-Binding Protein 2, Nuclear Poly(A) Protein 1, Poly(A)-Binding Protein II, Pabii, Polyadenylate Nuclear Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bc010939, Pab2, Pabp2, Pabpn1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hk100
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Speedet
symmetry Space Group: I 2 3
R_factor 0.163 R_Free 0.210
length a length b length c angle alpha angle beta angle gamma
92.678 92.678 92.678 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand EDO, MSE, PEG, PGE, SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (3ucg.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3UCG
  • CSU: Contacts of Structural Units for 3UCG
  • Structure Factors (2482 Kb)
  • Retrieve 3UCG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UCG from S2C, [Save to disk]
  • Re-refined 3ucg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UCG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UCG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UCG, from MSDmotif at EBI
  • Fold representative 3ucg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ucg_A] [3ucg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UCG: [RRM ] by SMART
  • Other resources with information on 3UCG
  • Community annotation for 3UCG at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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