3UGM	Transcription Dna	date	Nov 02, 2011
title	Structure Of Tal Effector Pthxo1 Bound To Its Dna Target
authors	A.N.S.Mak, P.Bradley, R.A.Cernadas, A.J.Bogdanove, B.L.Stoddard
compound		source
Molecule: Tal Effector Avrbs3ptha Chain: A Fragment: Unp Residues 21-1043 Engineered: Yes		Organism_scientific: Xanthomonas Oryzae Organism_taxid: 360094 Strain: Pxo99a Gene: Pthxo1, Pxo_00227 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna-1 Chain: B Engineered: Yes		Synthetic: Yes Other_details: Synthetic Dna
Molecule: Dna-2 Chain: C Engineered: Yes		Synthetic: Yes Other_details: Synthetic Dna
symmetry	Space Group: P 21 21 21	R_factor 0.266 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 95.578 248.481 54.646 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
note	3UGM (Molecule of the Month:pdb180)
Gene	PXO
Primary reference	The Crystal Structure of TAL Effector PthXo1 Bound to Its DNA Target., Mak AN, Bradley P, Cernadas RA, Bogdanove AJ, Stoddard BL, Science. 2012 Jan 5. PMID:22223736

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk] Biological Unit Coordinates (3ugm.pdb1.gz) 156 Kb CSU: Contacts of Structural Units for 3UGM Structure Factors (1239 Kb) Retrieve 3UGM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UGM from S2C, [Save to disk] Re-refined 3ugm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3UGM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3UGM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3UGM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ugm_B] [3ugm_A] [3ugm_C] [3ugm] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3UGM

Community annotation for 3UGM at PDBWiki (http://pdbwiki.org)

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