3UK3 Dna Metal Binding Protein date Nov 08, 2011
title Crystal Structure Of Znf217 Bound To Dna
authors M.S.Vandevenne, D.A.Jacques, J.M.Guss, J.P.Mackay
compound source
Molecule: 5'-D(Tptptpgpcpapgpapaptpcpgpaptpt Cpa)-3';
Chain: A
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Apaptpgpcpapgpapaptpcpgpaptpt Cpa)-3';
Chain: B
Engineered: Yes

Synthetic: Yes

Molecule: Zinc Finger Protein 217
Chain: C, D
Fragment: Zinc Fingers 6 And 7 (Unp Residues 469-523)
Synonym: Transcription Factor Znf217
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Znf217, Zabc1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmal
symmetry Space Group: C 1 2 1
R_factor 0.224 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.670 40.980 52.040 90.00 97.21 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CL, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (3uk3.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 3UK3
  • CSU: Contacts of Structural Units for 3UK3
  • Structure Factors (400 Kb)
  • Retrieve 3UK3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UK3 from S2C, [Save to disk]
  • Re-refined 3uk3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UK3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UK3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UK3, from MSDmotif at EBI
  • Fold representative 3uk3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uk3_A] [3uk3_B] [3uk3] [3uk3_D] [3uk3_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UK3: [ZnF_C2H2 ] by SMART
  • Other resources with information on 3UK3
  • Community annotation for 3UK3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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