3UK6 Hydrolase date Nov 09, 2011
title Crystal Structure Of The Tip48 (Tip49b) Hexamer
authors M.Petukhov, A.Dagkessamanskaja, M.Bommer, T.Barrett, I.Tsaneva, A R.Queval, A.Shvetsov, M.Khodorkovskiy, E.Kas, M.Grigoriev
compound source
Molecule: Ruvb-Like 2
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Unp Residues 1-132, 239-463
Synonym: 48 Kda Tata Box-Binding Protein-Interacting Protei Tbp-Interacting Protein, 51 Kda Erythrocyte Cytosolic Prote 51, Ino80 Complex Subunit J, Repressing Pontin 52, Reptin 5 Tip60-Associated Protein 54-Beta, Tap54-Beta;
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cgi-46, Ino80j, Ruvbl2, Tip48, Tip49b
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Gold-De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21b
symmetry Space Group: P 1 21 1
R_factor 0.241 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.070 186.280 129.860 90.00 108.95 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand ADP enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceLarge-Scale Conformational Flexibility Determines the Properties of AAA+ TIP49 ATPases., Petukhov M, Dagkessamanskaja A, Bommer M, Barrett T, Tsaneva I, Yakimov A, Queval R, Shvetsov A, Khodorkovskiy M, Kas E, Grigoriev M, Structure. 2012 Jun 27. PMID:22748767
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1004 Kb) [Save to disk]
  • Biological Unit Coordinates (3uk6.pdb1.gz) 511 Kb
  • Biological Unit Coordinates (3uk6.pdb2.gz) 480 Kb
  • LPC: Ligand-Protein Contacts for 3UK6
  • CSU: Contacts of Structural Units for 3UK6
  • Structure Factors (821 Kb)
  • Retrieve 3UK6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UK6 from S2C, [Save to disk]
  • Re-refined 3uk6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UK6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UK6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UK6, from MSDmotif at EBI
  • Fold representative 3uk6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uk6_H] [3uk6_E] [3uk6_F] [3uk6_G] [3uk6_C] [3uk6_B] [3uk6_J] [3uk6_K] [3uk6_D] [3uk6_I] [3uk6] [3uk6_L] [3uk6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UK6: [AAA ] by SMART
  • Other resources with information on 3UK6
  • Community annotation for 3UK6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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