3ULR Hydrolase, Protein Binding date Nov 11, 2011
title Lysozyme Contamination Facilitates Crystallization Of A Hete Trimericcortactin:Arg:Lysozyme Complex
authors W.Liu, S.Macgrath, A.J.Koleske, T.J.Boggon
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D Iv
Ec: 3.2.1.17
Engineered: Yes
Organism_scientific: Gallus Gallus
Organism_common: Bantam,Chickens
Organism_taxid: 9031
Gene: Lyz

Molecule: Src Substrate Cortactin
Chain: B
Fragment: Sh3 Domain (Unp Residues 487-546)
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Cttn, Ems1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl 21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1

Molecule: Abelson Tyrosine-Protein Kinase 2
Chain: C
Fragment: Pxxp1 (Unp Residues 563-579)
Synonym: Abelson Murine Leukemia Viral Oncogene Homolog 2, Related Gene Protein, Tyrosine-Protein Kinase Arg;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.184 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.658 57.838 95.513 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceLysozyme contamination facilitates crystallization of a heterotrimeric cortactin-Arg-lysozyme complex., Liu W, Macgrath SM, Koleske AJ, Boggon TJ, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Feb 1;68(Pt, 2):154-8. Epub 2012 Jan 25. PMID:22297987
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3ulr.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 3ULR
  • Structure Factors (375 Kb)
  • Retrieve 3ULR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ULR from S2C, [Save to disk]
  • Re-refined 3ulr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ULR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ULR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ULR, from MSDmotif at EBI
  • Fold representative 3ulr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ulr_C] [3ulr_B] [3ulr_A] [3ulr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3ULR: [LYZ1] [SH3 ] by SMART
  • Other resources with information on 3ULR
  • Community annotation for 3ULR at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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