3UMN Structural Protein date Nov 14, 2011
title Crystal Structure Of Lamin-B1
authors C.Xu, C.B.Bian, M.F.Amaya, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.Min, Structural Genomics Consortiu
compound source
Molecule: Lamin-B1
Chain: A, B, C
Fragment: Globular Tail Domain, Unp Residues 428-550
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lmnb1, Lmn2, Lmnb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 2
R_factor 0.243 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.538 169.963 53.613 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
note 3UMN supersedes 3HN9
Primary referenceCrystal structures of the coil 2B fragment and the globular tail domain of human lamin B1., Ruan J, Xu C, Bian C, Lam R, Wang JP, Kania J, Min J, Zang J, FEBS Lett. 2012 Feb 17;586(4):314-8. Epub 2012 Jan 16. PMID:22265972
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (3umn.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (3umn.pdb2.gz) 38 Kb
  • Biological Unit Coordinates (3umn.pdb3.gz) 39 Kb
  • CSU: Contacts of Structural Units for 3UMN
  • Structure Factors (504 Kb)
  • Retrieve 3UMN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UMN from S2C, [Save to disk]
  • Re-refined 3umn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UMN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UMN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UMN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3umn_A] [3umn_B] [3umn_C] [3umn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3UMN
  • Community annotation for 3UMN at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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