3UN0 Cell Cycle date Nov 15, 2011
title Crystal Structure Of Mdc1 Fha Domain
authors J.A.Clapperton, J.Lloyd, L.F.Haire, J.Li, S.J.Smerdon
compound source
Molecule: Mediator Of Dna Damage Checkpoint Protein 1
Chain: B, A
Fragment: N-Terminal Fha Domain
Synonym: Nuclear Factor With Brct Domains 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mdc1, Kiaa0170, Nfbd1
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pgex-6p1
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.250 54.711 98.063 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand SO4 enzyme
Primary referenceThe molecular basis of ATM-dependent dimerization of the Mdc1 DNA damage checkpoint mediator., Jungmichel S, Clapperton JA, Lloyd J, Hari FJ, Spycher C, Pavic L, Li J, Haire LF, Bonalli M, Larsen DH, Lukas C, Lukas J, MacMillan D, Nielsen ML, Stucki M, Smerdon SJ, Nucleic Acids Res. 2012 May;40(9):3913-28. Epub 2012 Jan 10. PMID:22234878
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (3un0.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (3un0.pdb2.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 3UN0
  • CSU: Contacts of Structural Units for 3UN0
  • Structure Factors (99 Kb)
  • Retrieve 3UN0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UN0 from S2C, [Save to disk]
  • Re-refined 3un0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UN0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UN0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UN0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3un0_A] [3un0] [3un0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UN0: [FHA ] by SMART
  • Other resources with information on 3UN0
  • Community annotation for 3UN0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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