3UO7	Hydrolase Dna	date	Nov 16, 2011
title	Crystal Structure Of Human Thymine Dna Glycosylase Bound To 5-Carboxylcytosine
authors	L.Zhang, C.He
compound		source
Molecule: 5'-D(Cpapgpcptpcptpgptpapcpaptpgpa Gptpgpgpa)-3'; Chain: C Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Cpcpapcptpgpcptpcpap(1cc) Pgptpapcpapgpapgpcptpgpt)-3'; Chain: D Engineered: Yes		Synthetic: Yes
Molecule: Gt Mismatch-Specific Thymine Dna Glycosylase Chain: A, B Fragment: Unp Residues 111-308 Synonym: Thymine-Dna Glycosylase, Tdg Ec: 3.2.2.29 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tdg Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 65	R_factor 0.227 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 164.352 164.352 57.569 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	1CC	enzyme	Hydrolase E.C.3.2.2.29 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine-modified DNA., Zhang L, Lu X, Lu J, Liang H, Dai Q, Xu GL, Luo C, Jiang H, He C, Nat Chem Biol. 2012 Feb 12;8(4):328-30. doi: 10.1038/nchembio.914. PMID:22327402

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (3uo7.pdb1.gz) 76 Kb LPC: Ligand-Protein Contacts for 3UO7 CSU: Contacts of Structural Units for 3UO7 Structure Factors (239 Kb) Retrieve 3UO7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UO7 from S2C, [Save to disk] Re-refined 3uo7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3UO7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3UO7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3UO7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3uo7_D] [3uo7_B] [3uo7_C] [3uo7] [3uo7_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3UO7: [UDG] [UreE_C ] by SMART

Other resources with information on 3UO7

Community annotation for 3UO7 at PDBWiki (http://pdbwiki.org)

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