3UPP		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CEF	enzyme
Gene Ontology	Chain Function Process Component A, B peptidoglycan L,D-transpepti...
Primary reference	The role of the beta5-alpha11 loop in the active-site dynamics of acylated penicillin-binding protein A from Mycobacterium tuberculosis., Fedarovich A, Nicholas RA, Davies C, J Mol Biol. 2012 May 18;418(5):316-30. Epub 2012 Feb 23. PMID:22365933

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (270 Kb) [Save to disk] Biological Unit Coordinates (3upp.pdb1.gz) 134 Kb Biological Unit Coordinates (3upp.pdb2.gz) 133 Kb LPC: Ligand-Protein Contacts for 3UPP CSU: Contacts of Structural Units for 3UPP Structure Factors (253 Kb) Retrieve 3UPP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UPP from S2C, [Save to disk] Re-refined 3upp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3UPP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3upp] [3upp_A] [3upp_B] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---