3UQ0 Transferase, Lyase Dna date Nov 18, 2011
title Crystal Structure Of The Post-Catalytic Product Complex Of P Lambda With An Ramp At The Primer Terminus.
authors R.A.Gosavi, A.F.Moon, T.A.Kunkel, L.C.Pedersen, K.Bebenek
compound source
Molecule: Dna Polymerase Lambda
Chain: A
Fragment: Loop Mutant Of Dna Polymerase Lambda
Synonym: Pol Lambda, Dna Polymerase Beta-2, Pol Beta2, Dna Kappa;
Ec:, 4.2.99.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Poll
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-D(Cpgpgpcptpgptpapcptpg)-3'
Chain: T
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Cpapgptpapcp)-R(Pa)-3'
Chain: P
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Pgpcpcpg)-3'
Chain: D
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.239
length a length b length c angle alpha angle beta angle gamma
55.843 64.241 139.290 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.14 Å
ligand CL, EDO, NA, SO4 enzyme Transferase E.C. BRENDA

Primary referenceThe catalytic cycle for ribonucleotide incorporation by human DNA Pol lambda, Gosavi RA, Moon AF, Kunkel TA, Pedersen LC, Bebenek K, Nucleic Acids Res. 2012 May 14. PMID:22584622
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (3uq0.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3UQ0
  • CSU: Contacts of Structural Units for 3UQ0
  • Structure Factors (260 Kb)
  • Retrieve 3UQ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UQ0 from S2C, [Save to disk]
  • Re-refined 3uq0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UQ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UQ0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UQ0, from MSDmotif at EBI
  • Fold representative 3uq0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uq0_A] [3uq0] [3uq0_T] [3uq0_P] [3uq0_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3UQ0: [HhH1] [POLXc ] by SMART
  • Other resources with information on 3UQ0
  • Community annotation for 3UQ0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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