3UQW Hydrolase Hydrolase Inhibitor date Nov 21, 2011
title Crystal Structure Of Bace1 With Its Inhibitor
authors T.T.Chen, W.Y.Chen, Y.C.Xu
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Unp Residues 43-454
Synonym: Bace1, Aspartyl Protease 2, Beta-Site Amyloid Prec Protein Cleaving Enzyme 1, Beta-Site App Cleaving Enzyme 1, Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: C 2 2 21
R_factor 0.169 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.315 131.544 78.541 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand SO4, ZPY enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3uqw.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3UQW
  • CSU: Contacts of Structural Units for 3UQW
  • Structure Factors (641 Kb)
  • Retrieve 3UQW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UQW from S2C, [Save to disk]
  • Re-refined 3uqw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UQW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UQW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UQW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uqw_A] [3uqw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3UQW
  • Community annotation for 3UQW at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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