3US2 Transcription Activator Dna date Nov 22, 2011
title Structure Of P63 Dna Binding Domain In Complex With A 19 Bas Rich Response Element Containing Two Half Sites With A Sing Pair Overlap
authors C.Chen, O.Herzberg
compound source
Molecule: Tumor Protein 63
Chain: A, B, C, D, G, H, I, J
Fragment: Dna Binding Domain (Unp Residues 166-362)
Synonym: Tp63, P63, Chronic Ulcerative Stomatitis Protein, Keratinocyte Transcription Factor Ket, Transformation-Relat 63, Tumor Protein P73-Like, P73l, P40, P51;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ket, P63, P73h, P73l, Tp63, Tp73l
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a

Molecule: 5'-D(Apapapcpaptpgptptpapapapcpapt T)-3';
Chain: E, K
Engineered: Yes
Other_details: P63 Response Element With 1-Bp Overlapping H (Strand 1);

Synthetic: Yes

Molecule: 5'-D(Apapapcpaptpgptptptpapapcpapt T)-3';
Chain: F, L
Engineered: Yes
Other_details: P63 Response Element With 1-Bp Overlapping H (Strand 2)

Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.326 R_Free 0.334
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.739 180.544 98.174 90.00 90.05 90.00
method X-Ray Diffractionresolution 4.20 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
H, A, J, D, C, I, G, B


Primary referencePliable DNA conformation of response elements bound to transcription factor P63., Chen C, Gorlatova N, Herzberg O, J Biol Chem. 2012 Jan 12. PMID:22247550
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (561 Kb) [Save to disk]
  • Biological Unit Coordinates (3us2.pdb1.gz) 282 Kb
  • Biological Unit Coordinates (3us2.pdb2.gz) 275 Kb
  • LPC: Ligand-Protein Contacts for 3US2
  • CSU: Contacts of Structural Units for 3US2
  • Structure Factors (226 Kb)
  • Retrieve 3US2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3US2 from S2C, [Save to disk]
  • Re-refined 3us2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3US2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3US2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3US2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3us2_G] [3us2_K] [3us2_F] [3us2_I] [3us2_E] [3us2_H] [3us2_A] [3us2_D] [3us2_B] [3us2_L] [3us2_C] [3us2] [3us2_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3US2
  • Community annotation for 3US2 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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