3UVD Transcription date Nov 29, 2011
title Crystal Structure Of The Bromodomain Of Human Transcription Brg1 (Smarca4) In Complex With N-Methyl-2-Pyrrolidone
authors P.Filippakopoulos, I.Felletar, S.Picaud, T.Keates, J.Muniz, O.Gil F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, Structural Genomics Consortium (Sgc)
compound source
Molecule: Transcription Activator Brg1
Chain: A
Fragment: Unp Residues 1448-1569
Synonym: Brg1-Associated Factor Protein Brg-1
Ec: 3.6.4.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brg1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.200 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.200 29.890 67.060 90.00 90.45 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand MB3 enzyme Hydrolase E.C.3.6.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHistone recognition and large-scale structural analysis of the human bromodomain family., Filippakopoulos P, Picaud S, Mangos M, Keates T, Lambert JP, Barsyte-Lovejoy D, Felletar I, Volkmer R, Muller S, Pawson T, Gingras AC, Arrowsmith CH, Knapp S, Cell. 2012 Mar 30;149(1):214-31. PMID:22464331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3uvd.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3UVD
  • CSU: Contacts of Structural Units for 3UVD
  • Structure Factors (143 Kb)
  • Retrieve 3UVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UVD from S2C, [Save to disk]
  • Re-refined 3uvd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UVD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UVD, from MSDmotif at EBI
  • Fold representative 3uvd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uvd] [3uvd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UVD: [BROMO ] by SMART
  • Other resources with information on 3UVD
  • Community annotation for 3UVD at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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