3UVJ Lyase date Nov 30, 2011
title Crystal Structure Of The Catalytic Domain Of The Heterodimer Soluble Guanylate Cyclase 1.
authors C.K.Allerston, G.Berridge, R.Chalk, C.D.O.Cooper, P.Savitsky, M.V C.H.Arrowsmith, J.Weigelt, A.Edwards, C.Bountra, F.Von Delft, O. Structural Genomics Consortium (Sgc)
compound source
Molecule: Guanylate Cyclase Soluble Subunit Alpha-3
Chain: A, C
Fragment: Soluble Guanylate Cyclase Alpha-1 Catalytic Doma Residues 468-690;
Synonym: Gcs-Alpha-3, Gcs-Alpha-1, Soluble Guanylate Cyclas Subunit;
Ec: 4.6.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Guc1a3, Gucsa3, Gucy1a1, Gucy1a3
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-R3-Chaperones
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnh-Trxt

Molecule: Guanylate Cyclase Soluble Subunit Beta-1
Chain: B, D
Fragment: Soluble Guanylate Cyclase Beta-1 Catalytic Domai Residues 408-619;
Synonym: Gcs-Beta-1, Guanylate Cyclase Soluble Subunit Beta Beta-3, Soluble Guanylate Cyclase Small Subunit;
Ec: 4.6.1.2
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gucy1b3, Guc1b3, Gucsb3, Gucy1b1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-R3-Chaperones
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Cthf
symmetry Space Group: P 1 21 1
R_factor 0.167 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.780 139.100 55.460 90.00 91.47 90.00
method X-Ray Diffractionresolution 2.08 Å
ligand EDO, GOL enzyme Lyase E.C.4.6.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structures of the catalytic domain of human soluble guanylate cyclase., Allerston CK, von Delft F, Gileadi O, PLoS One. 2013;8(3):e57644. doi: 10.1371/journal.pone.0057644. Epub 2013 Mar 7. PMID:23505436
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (3uvj.pdb1.gz) 130 Kb
  • Biological Unit Coordinates (3uvj.pdb2.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 3UVJ
  • CSU: Contacts of Structural Units for 3UVJ
  • Structure Factors (2372 Kb)
  • Retrieve 3UVJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UVJ from S2C, [Save to disk]
  • Re-refined 3uvj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UVJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UVJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UVJ, from MSDmotif at EBI
  • Fold representative 3uvj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uvj_D] [3uvj_C] [3uvj_A] [3uvj] [3uvj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UVJ: [CYCc ] by SMART
  • Other resources with information on 3UVJ
  • Community annotation for 3UVJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science