3UVL Transcription date Nov 30, 2011
title Crystal Structure Of Wdr5 In Complex With The Wdr5-Interacti Of Mll3
authors P.Zhang, H.Lee, J.S.Brunzelle, J.F.Couture
compound source
Molecule: Wd Repeat-Containing Protein 5
Chain: A
Fragment: Unp Residues 21-334
Synonym: Wdr5, Bmp2-Induced 3-Kb Gene Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr5, Big3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone-Lysine N-Methyltransferase Mll3
Chain: B
Fragment: Wdr5-Interacting Motif (Unp Residues 4707-4717)
Synonym: Homologous To Alr Protein, Lysine N-Methyltransfer Kmt2c, Myeloidlymphoid Or Mixed-Lineage Leukemia Protein 3
Ec: 2.1.1.43
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.170 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.980 86.221 40.483 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe plasticity of WDR5 peptide-binding cleft enables the binding of the SET1 family of histone methyltransferases., Zhang P, Lee H, Brunzelle JS, Couture JF, Nucleic Acids Res. 2012 Jan 20. PMID:22266653
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (3uvl.pdb1.gz) 101 Kb
  • CSU: Contacts of Structural Units for 3UVL
  • Structure Factors (310 Kb)
  • Retrieve 3UVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UVL from S2C, [Save to disk]
  • Re-refined 3uvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UVL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UVL, from MSDmotif at EBI
  • Fold representative 3uvl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uvl] [3uvl_A] [3uvl_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UVL: [WD40 ] by SMART
  • Other resources with information on 3UVL
  • Community annotation for 3UVL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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