3UXA Lyase date Dec 05, 2011
title Designed Protein Ke59 R1 710h
authors O.Khersonsky, G.Kiss, D.Roethlisberger, O.Dym, S.Albeck, K.N.Houk D.S.Tawfik, Israel Structural Proteomics Center (Ispc)
compound source
Molecule: Kemp Eliminase Ke59 R1 710h
Chain: A, B
Ec: 4.-.-.-
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31
R_factor 0.212 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.860 61.860 119.435 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand PO4 enzyme Lyase E.C.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBridging the gaps in design methodologies by evolutionary optimization of the stability and proficiency of designed Kemp eliminase KE59., Khersonsky O, Kiss G, Rothlisberger D, Dym O, Albeck S, Houk KN, Baker D, Tawfik DS, Proc Natl Acad Sci U S A. 2012 Jun 8. PMID:22685214
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (3uxa.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (3uxa.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3UXA
  • CSU: Contacts of Structural Units for 3UXA
  • Structure Factors (266 Kb)
  • Retrieve 3UXA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UXA from S2C, [Save to disk]
  • Re-refined 3uxa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UXA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UXA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UXA, from MSDmotif at EBI
  • Fold representative 3uxa from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uxa_B] [3uxa_A] [3uxa]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3UXA
  • Community annotation for 3UXA at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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