3V05 Toxin date Dec 07, 2011
title 2.4 Angstrom Crystal Structure Of Superantigen-Like Protein Staphylococcus Aureus.
authors G.Minasov, A.Halavaty, L.Shuvalova, E.V.Filippova, I.Dubrovska, J F.Bagnoli, F.Falugi, M.Bottomley, G.Grandi, W.F.Anderson, Center Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Superantigen-Like Protein
Chain: A, B, C, D
Fragment: Unp Residues 31-231
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus Subsp. Aureus
Organism_taxid: 93061
Strain: Nctc 8325
Gene: Saouhsc_00391
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.640 106.504 162.085 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CL enzyme
Gene SAOUHSC
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (3v05.pdb1.gz) 138 Kb
  • Biological Unit Coordinates (3v05.pdb2.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 3V05
  • CSU: Contacts of Structural Units for 3V05
  • Structure Factors (498 Kb)
  • Retrieve 3V05 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V05 from S2C, [Save to disk]
  • Re-refined 3v05 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3V05 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3V05
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V05, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v05_B] [3v05_C] [3v05_A] [3v05] [3v05_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3V05
  • Community annotation for 3V05 at PDBWiki (http://pdbwiki.org)
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