3V0S Oxidoreductase date Dec 08, 2011
title Crystal Structure Of Perakine Reductase, Founder Member Of A Subfamily With Unique Conformational Changes During Nadph B
authors L.Sun, Y.Chen, C.Rajendran, S.Panjikar, U.Mueller, M.Wang, C.Rosen R.Mindnich, T.M.Penning, J.Stoeckigt
compound source
Molecule: Perakine Reductase
Chain: A
Ec: 1.1.1.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Rauvolfia Serpentina
Organism_common: Devilpepper
Organism_taxid: 4060
Gene: Pr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.184 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.199 55.199 210.228 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.77 Å
ligand ATR, M3L, MLY, MLZ enzyme Oxidoreductase E.C.1.1.1 BRENDA
note 3V0S is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of perakine reductase, founding member of a novel aldo-keto reductase (AKR) subfamily that undergoes unique conformational changes during NADPH binding., Sun L, Chen Y, Rajendran C, Mueller U, Panjikar S, Wang M, Mindnich R, Rosenthal C, Penning TM, Stockigt J, J Biol Chem. 2012 Mar 30;287(14):11213-21. Epub 2012 Feb 13. PMID:22334702
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (3v0s.pdb1.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 3V0S
  • CSU: Contacts of Structural Units for 3V0S
  • Structure Factors (529 Kb)
  • Retrieve 3V0S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V0S from S2C, [Save to disk]
  • Re-refined 3v0s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V0S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V0S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V0S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v0s] [3v0s_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3V0S
  • Community annotation for 3V0S at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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