3V0V date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceAntibody WN1 222-5 mimics Toll-like receptor 4 binding in the recognition of LPS., Gomery K, Muller-Loennies S, Brooks CL, Brade L, Kosma P, Di Padova F, Brade H, Evans SV, Proc Natl Acad Sci U S A. 2012 Dec 18;109(51):20877-82. doi:, 10.1073/pnas.1209253109. Epub 2012 Nov 26. PMID:23184990
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (3v0v.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (3v0v.pdb2.gz) 71 Kb
  • CSU: Contacts of Structural Units for 3V0V
  • Structure Factors (607 Kb)
  • Retrieve 3V0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V0V from S2C, [Save to disk]
  • Re-refined 3v0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V0V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V0V, from MSDmotif at EBI
  • Fold representative 3v0v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v0v] [3v0v_A] [3v0v_B] [3v0v_H] [3v0v_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3V0V: [IG_like] [IGv ] by SMART
  • Other resources with information on 3V0V
  • Community annotation for 3V0V at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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