3V1Y date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NAD enzyme
Gene LOC ; OJ1163 ; OSJ
Gene
Ontology
ChainFunctionProcessComponent
B, O, C, A


Primary referenceCrystal structures of rice (Oryza sativa) glyceraldehyde-3-phosphate dehydrogenase complexes with NAD and sulfate suggest involvement of Phe37 in NAD binding for catalysis., Tien YC, Chuankhayan P, Huang YC, Chen CD, Alikhajeh J, Chang SL, Chen CJ, Plant Mol Biol. 2012 Nov;80(4-5):389-403. doi: 10.1007/s11103-012-9953-7. Epub, 2012 Aug 18. PMID:22903596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (3v1y.pdb1.gz) 196 Kb
  • LPC: Ligand-Protein Contacts for 3V1Y
  • CSU: Contacts of Structural Units for 3V1Y
  • Structure Factors (1450 Kb)
  • Retrieve 3V1Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V1Y from S2C, [Save to disk]
  • Re-refined 3v1y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3V1Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v1y] [3v1y_A] [3v1y_B] [3v1y_C] [3v1y_O]
  • SWISS-PROT database:
  • Domain found in 3V1Y: [Gp_dh_N ] by SMART

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