3V1Z	Hydrolase Dna	date	Dec 11, 2011
title	Crystal Structure Of Type Iif Restriction Endonuclease Bse63 Cognate Dna
authors	E.N.Manakova, S.Grazulis, D.Golovenko, G.Tamulaitiene
compound		source
Molecule: Endonuclease Bse634ir Chain: A, B Ec: 3.1.21.4 Engineered: Yes Mutation: Yes		Organism_scientific: Geobacillus Stearothermophilus Organism_taxid: 1422 Strain: 1422 Gene: Bse634ir Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Er2267 Expression_system_vector_type: Plasmid Expression_system_plasmid: Puc18
Molecule: Dna (5'-D(Tpcpgpcpgpcpcpgpgpcpgpcpg) Chain: C, D Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 21 21 2	R_factor 0.226 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.008 83.632 123.336 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand		enzyme	Hydrolase E.C.3.1.21.4 BRENDA
Gene Ontology	Chain Function Process Component A, B endonuclease activity
Primary reference	Structural mechanisms of the degenerate sequence recognition by Bse634I restriction endonuclease., Manakova E, Grazulis S, Zaremba M, Tamulaitiene G, Golovenko D, Siksnys V, Nucleic Acids Res. 2012 Apr 11. PMID:22495930

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk] Biological Unit Coordinates (3v1z.pdb1.gz) 217 Kb Biological Unit Coordinates (3v1z.pdb2.gz) 213 Kb CSU: Contacts of Structural Units for 3V1Z Structure Factors (814 Kb) Retrieve 3V1Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3V1Z from S2C, [Save to disk] Re-refined 3v1z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3V1Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3V1Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3V1Z, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v1z_D] [3v1z_C] [3v1z] [3v1z_B] [3v1z_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3V1Z

Community annotation for 3V1Z at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---