3V2B	Transferase	date	Dec 12, 2011
title	Human Poly(Adp-Ribose) Polymerase 15 (Artd7, Bal3), Macro Do Complex With Adenosine-5-Diphosphoribose
authors	T.Karlberg, M.Moche, C.H.Arrowsmith, H.Berglund, C.Bountra, R.Col A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, I.Jo A.Kallas, T.Kotenyova, A.Kotzcsh, P.Kraulis, T.K.Nielsen, P.Nord T.Nyman, C.Persson, A.K.Roos, P.Schutz, M.I.Siponen, A.G.Thorsel L.Tresaugues, S.Van Den Berg, J.Weigelt, M.Welin, M.Wisniewska, H.Schuler, Structural Genomics Consortium (Sgc)
compound		source
Molecule: Poly [Adp-Ribose] Polymerase 15 Chain: A Fragment: Macro Domain 2 Synonym: Parp-15, B-Aggressive Lymphoma Protein 3 Ec: 2.4.2.30 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bal3, Parp15 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) R3 Prare Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic-Bsa4
symmetry	Space Group: C 2 2 21	R_factor 0.173 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.102 91.187 62.851 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	AR6	enzyme	Transferase E.C.2.4.2.30 BRENDA
note	3V2B supersedes 3KH6
Primary reference	Recognition of Mono-ADP-Ribosylated ARTD10 Substrates by ARTD8 Macrodomains., Forst AH, Karlberg T, Herzog N, Thorsell AG, Gross A, Feijs KL, Verheugd P, Kursula P, Nijmeijer B, Kremmer E, Kleine H, Ladurner AG, Schuler H, Luscher B, Structure. 2013 Mar 5;21(3):462-75. doi: 10.1016/j.str.2012.12.019. PMID:23473667

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk] Biological Unit Coordinates (3v2b.pdb1.gz) 31 Kb Biological Unit Coordinates (3v2b.pdb2.gz) 60 Kb LPC: Ligand-Protein Contacts for 3V2B CSU: Contacts of Structural Units for 3V2B Structure Factors (82 Kb) Retrieve 3V2B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3V2B from S2C, [Save to disk] Re-refined 3v2b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3V2B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3V2B

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3V2B, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v2b] [3v2b_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3V2B: [A1pp ] by SMART

Other resources with information on 3V2B

Community annotation for 3V2B at PDBWiki (http://pdbwiki.org)

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