3V2O	Protein Binding	date	Dec 12, 2011
title	Crystal Structure Of The Peptide Bound Complex Of The Ankyri Domains Of Human Ankra2
authors	R.Lam, C.Xu, C.B.Bian, J.Kania, C.Bountra, J.Weigelt, C.H.Arrowsmi A.M.Edwards, A.Bochkarev, J.Min, Structural Genomics Consortiu
compound		source
Molecule: Ankyrin Repeat Family A Protein 2 Chain: A Fragment: Unp Residues 148-313 (Ank Repeats) Synonym: Rfxank-Like Protein 2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ankra, Ankra2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21-(De3)-V2r-Prare2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Mhl
Molecule: Low-Density Lipoprotein Receptor-Related Protein Chain: B Synonym: Lrp-2, Glycoprotein 330, Gp330, Megalin Engineered: Yes		Synthetic: Yes Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Other_details: This Sequence Occurs Naturally In Rat Lrp2m
symmetry	Space Group: P 1 21 1	R_factor 0.227 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.266 49.569 41.059 90.00 97.52 90.00
method	X-Ray Diffraction	resolution	1.89 Å
Primary reference	Sequence-Specific Recognition of a PxLPxI/L Motif by an Ankyrin Repeat Tumbler Lock., Xu C, Jin J, Bian C, Lam R, Tian R, Weist R, You L, Nie J, Bochkarev A, Tempel W, Tan CS, Wasney GA, Vedadi M, Gish GD, Arrowsmith CH, Pawson T, Yang XJ, Min J, Sci Signal. 2012 May 29;5(226):ra39. PMID:22649097

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (3v2o.pdb1.gz) 52 Kb CSU: Contacts of Structural Units for 3V2O Structure Factors (257 Kb) Retrieve 3V2O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3V2O from S2C, [Save to disk] Re-refined 3v2o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3V2O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3V2O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3V2O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v2o] [3v2o_A] [3v2o_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3V2O: [ANK ] by SMART

Other resources with information on 3V2O

Community annotation for 3V2O at PDBWiki (http://pdbwiki.org)

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