3V3V	Transferase Transferase Inhibitor	date	Dec 14, 2011
title	Structural And Functional Analysis Of Quercetagetin, A Natur Inhibitor
authors	S.Baek, N.J.Kang, G.M.Popowicz, M.Arciniega, S.K.Jung, S.Byun, N.R Y.S.Heo, B.Y.Kim, H.J.Lee, T.A.Holak, M.Augustin, A.M.Bode, R.Hub Z.Dong, K.W.Lee
compound		source
Molecule: Mitogen-Activated Protein Kinase 8 Chain: A Fragment: Unp Residues 1-363 Synonym: Map Kinase 8, Mapk 8, Jnk-46, Stress-Activated Pro Kinase 1c, Sapk1c, Stress-Activated Protein Kinase Jnk1, C- Terminal Kinase 1; Ec: 2.7.11.24 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mapk8, Jnk1, Prkm8, Sapk1, Sapk1c Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pet-21b
Molecule: C-Jun-Amino-Terminal Kinase-Interacting Protein 1 Chain: B Fragment: Unp Residues 153-163 Synonym: Jip-1, Jnk-Interacting Protein 1, Islet-Brain-1, I Map Kinase Scaffold Protein 1, Mitogen-Activated Protein Ki Interacting Protein 1; Engineered: Yes		Synthetic: Yes Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Other_details: Fmoc Synthesis
symmetry	Space Group: I 4 2 2	R_factor 0.227 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 172.370 172.370 86.040 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	CL, MYU, SO4	enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural and Functional Analysis of the Natural JNK1 Inhibitor Quercetagetin., Baek S, Kang NJ, Popowicz GM, Arciniega M, Jung SK, Byun S, Song NR, Heo YS, Kim BY, Lee HJ, Holak TA, Augustin M, Bode AM, Huber R, Dong Z, Lee KW, J Mol Biol. 2012 Nov 8. pii: S0022-2836(12)00852-2. doi:, 10.1016/j.jmb.2012.10.019. PMID:23142567

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk] Biological Unit Coordinates (3v3v.pdb1.gz) 59 Kb Biological Unit Coordinates (3v3v.pdb2.gz) 117 Kb Biological Unit Coordinates (3v3v.pdb3.gz) 461 Kb LPC: Ligand-Protein Contacts for 3V3V CSU: Contacts of Structural Units for 3V3V Structure Factors (128 Kb) Retrieve 3V3V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3V3V from S2C, [Save to disk] Re-refined 3v3v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3V3V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3V3V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3V3V, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v3v] [3v3v_A] [3v3v_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3V3V: [S_TKc ] by SMART

Other resources with information on 3V3V

Community annotation for 3V3V at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---