3V42 Protein Binding date Dec 14, 2011
title Crystal Structure Of Renal Tumor Suppressor Protein, Follicu
authors R.K.Nookala, D.Y.Chirgadze, T.L.Blundell
compound source
Molecule: Folliculin
Chain: A, B
Fragment: C-Terminal Domain, Unp Residues 341-566
Synonym: Bhd Skin Lesion Fibrofolliculoma Protein, Birt-Hog Syndrome Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bhd, Flcn
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star
Expression_system_vector_type: Gateway Destination Vector
Expression_system_plasmid: Petg10a
symmetry Space Group: C 2 2 21
R_factor 0.204 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.050 99.951 107.584 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceCrystal structure of folliculin reveals a hidDENN function in genetically inherited renal cancer., Nookala RK, Langemeyer L, Pacitto A, Ochoa-Montano B, Donaldson JC, Blaszczyk BK, Chirgadze DY, Barr FA, Bazan JF, Blundell TL, Open Biol. 2012 Aug;2(8):120071. PMID:22977732
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (3v42.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (3v42.pdb2.gz) 66 Kb
  • Biological Unit Coordinates (3v42.pdb3.gz) 131 Kb
  • CSU: Contacts of Structural Units for 3V42
  • Structure Factors (478 Kb)
  • Retrieve 3V42 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V42 from S2C, [Save to disk]
  • Re-refined 3v42 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V42 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V42
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V42, from MSDmotif at EBI
  • Fold representative 3v42 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v42_A] [3v42_B] [3v42]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3V42 with the sequences similar proteins can be viewed for 3V42's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3V42
  • Community annotation for 3V42 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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