3V4O Hydrolase Inhibitor date Dec 15, 2011
title Human Malt1 (Caspase Domain) In Complex With An Irreversible Inhibitor
authors M.Renatus, C.Wiesmann
compound source
Molecule: Mucosa-Associated Lymphoid Tissue Lymphoma Transl Protein 1;
Chain: A
Fragment: Unp Residues 329-569
Synonym: Malt Lymphoma-Associated Translocation, Paracaspas
Ec: 3.4.22.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Malt1, Mlt
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Malt1 Inhibitor
Chain: B
Synonym: Z-Vrpr-Fmk
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 61 2 2
R_factor 0.176 R_Free 0.228
length a length b length c angle alpha angle beta angle gamma
77.500 77.500 180.493 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand CF0, PHQ enzyme Hydrolase E.C.3.4.22 BRENDA

Primary referenceStructural Determinants of MALT1 Protease Activity., Wiesmann C, Leder L, Blank J, Bernardi A, Melkko S, Decock A, D'Arcy A, Villard F, Erbel P, Hughes N, Freuler F, Nikolay R, Alves J, Bornancin F, Renatus M, J Mol Biol. 2012 Feb 23. PMID:22366302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3v4o.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 3V4O
  • CSU: Contacts of Structural Units for 3V4O
  • Structure Factors (276 Kb)
  • Retrieve 3V4O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V4O from S2C, [Save to disk]
  • Re-refined 3v4o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V4O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V4O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V4O, from MSDmotif at EBI
  • Fold representative 3v4o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v4o_A] [3v4o] [3v4o_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3V4O: [CASc ] by SMART
  • Other resources with information on 3V4O
  • Community annotation for 3V4O at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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