3V4Q Structural Protein date Dec 15, 2011
title Structure Of R335w Mutant Of Human Lamin
authors M.Bollati, M Bolognesi
compound source
Molecule: Prelamin-Ac
Chain: A
Fragment: Coil 2b
Synonym: Lamin-Ac, 70 Kda Lamin, Renal Carcinoma Antigen N
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamin Ac, Lmn1, Lmna
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.275 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.499 90.499 75.425 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.06 Å
Primary referenceStructures of the lamin A/C R335W and E347K mutants: Implications for dilated cardiolaminopathies., Bollati M, Barbiroli A, Favalli V, Arbustini E, Charron P, Bolognesi M, Biochem Biophys Res Commun. 2012 Feb 10;418(2):217-21. Epub 2012 Jan 10. PMID:22266370
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (3v4q.pdb1.gz) 13 Kb
  • Biological Unit Coordinates (3v4q.pdb2.gz) 26 Kb
  • CSU: Contacts of Structural Units for 3V4Q
  • Structure Factors (55 Kb)
  • Retrieve 3V4Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V4Q from S2C, [Save to disk]
  • Re-refined 3v4q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V4Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V4Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V4Q, from MSDmotif at EBI
  • Fold representative 3v4q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v4q_A] [3v4q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3V4Q
  • Community annotation for 3V4Q at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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