3V51 Transferase Transferase Inhibitor date Dec 15, 2011
title Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (T Complex With Inhibitor Rm-1-176
authors E.A.Merritt, E.T.Larson
compound source
Molecule: Calmodulin-Domain Protein Kinase 1
Chain: A
Fragment: Unp Residues 30-507
Synonym: Calmodulin-Domain Protein Kinase, Putative
Ec: 2.7.11.17
Engineered: Yes
Organism_scientific: Toxoplasma Gondii
Organism_taxid: 5811
Gene: Aag53993, Cdpk1, Tggt1_059880, Tgveg_042030
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ava0421
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.317 72.619 67.356 90.00 103.90 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand I76 enzyme Transferase E.C.2.7.11.17 BRENDA
Gene TGGT1 ; TGVEG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMultiple determinants for selective inhibition of apicomplexan calcium-dependent protein kinase CDPK1., Larson ET, Ojo KK, Murphy RC, Johnson SM, Zhang Z, Kim JE, Leibly DJ, Fox AM, Reid MC, Dale EJ, Perera BG, Kim J, Hewitt SN, Hol WG, Verlinde CL, Fan E, Van Voorhis WC, Maly DJ, Merritt EA, J Med Chem. 2012 Feb 27. PMID:22369268
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (3v51.pdb1.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 3V51
  • CSU: Contacts of Structural Units for 3V51
  • Structure Factors (723 Kb)
  • Retrieve 3V51 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V51 from S2C, [Save to disk]
  • Re-refined 3v51 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V51 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V51
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V51, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v51] [3v51_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3V51: [EFh] [S_TKc ] by SMART
  • Other resources with information on 3V51
  • Community annotation for 3V51 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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