OCA Atlas for 3V56

3V56

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ACE, NH2, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, D, F, C, E, A

Primary reference

Exploiting structure similarity in refinement: automated NCS and target-structure restraints in BUSTER., Smart OS, Womack TO, Flensburg C, Keller P, Paciorek W, Sharff A, Vonrhein C, Bricogne G, Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):368-80. Epub 2012 Mar 16. PMID:22505257

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (316 Kb) [Save to disk]

Biological Unit Coordinates (3v56.pdb1.gz) 154 Kb

Biological Unit Coordinates (3v56.pdb2.gz) 154 Kb

Biological Unit Coordinates (3v56.pdb3.gz) 7 Kb

LPC: Ligand-Protein Contacts for 3V56

CSU: Contacts of Structural Units for 3V56

Structure Factors (977 Kb)

Retrieve 3V56 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3V56 from S2C, [Save to disk]

Re-refined 3v56 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3V56 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v56] [3v56_A] [3v56_B] [3v56_C] [3v56_D] [3v56_E] [3v56_F] [3v56_G] [3v56_H] [3v56_I] [3v56_J] [3v56_K] [3v56_L] [3v56_Z]

SWISS-PROT database:

Domain found in 3V56: [TNF ] by SMART

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