3V5B Structural Protein date Dec 16, 2011
title Structure Of Coil 2b Of Human Lamin
authors M.Bollati, M Bolognesi
compound source
Molecule: Prelamin-Ac
Chain: A
Synonym: Lamin-Ac, 70 Kda Lamin, Renal Carcinoma Antigen N
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lmna, Lmn1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.280 R_Free 0.326
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.020 90.020 74.722 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
Primary referenceStructures of the lamin A/C R335W and E347K mutants: Implications for dilated cardiolaminopathies., Bollati M, Barbiroli A, Favalli V, Arbustini E, Charron P, Bolognesi M, Biochem Biophys Res Commun. 2012 Feb 10;418(2):217-21. Epub 2012 Jan 10. PMID:22266370
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (3v5b.pdb1.gz) 13 Kb
  • Biological Unit Coordinates (3v5b.pdb2.gz) 25 Kb
  • CSU: Contacts of Structural Units for 3V5B
  • Structure Factors (57 Kb)
  • Retrieve 3V5B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V5B from S2C, [Save to disk]
  • Re-refined 3v5b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V5B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V5B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V5B, from MSDmotif at EBI
  • Fold representative 3v5b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v5b] [3v5b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3V5B with the sequences similar proteins can be viewed for 3V5B's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3V5B
  • Community annotation for 3V5B at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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