3V92 Oxidoreductase date Dec 23, 2011
title S663a Stable-5-Lox
authors N.C.Gilbert, Z.Rui, D.B.Neau, M.Waight, S.G.Bartlett, W.E.Boeglin A.R.Brash, M.E.Newcomer
compound source
Molecule: Arachidonate 5-Lipoxygenase
Chain: B, A
Synonym: 5-Lo, 5-Lipoxygenase
Ec: 1.13.11.34
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alox5, Log5
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Rosetta 2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 14
symmetry Space Group: P 1 21 1
R_factor 0.183 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.191 202.375 76.986 90.00 109.91 90.00
method X-Ray Diffractionresolution 2.74 Å
ligand FE2 enzyme Oxidoreductase E.C.1.13.11.34 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceConversion of human 5-lipoxygenase to a 15-lipoxygenase by a point mutation to mimic phosphorylation at Serine-663., Gilbert NC, Rui Z, Neau DB, Waight MT, Bartlett SG, Boeglin WE, Brash AR, Newcomer ME, FASEB J. 2012 Apr 18. PMID:22516296
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (415 Kb) [Save to disk]
  • Biological Unit Coordinates (3v92.pdb1.gz) 214 Kb
  • Biological Unit Coordinates (3v92.pdb2.gz) 199 Kb
  • LPC: Ligand-Protein Contacts for 3V92
  • CSU: Contacts of Structural Units for 3V92
  • Structure Factors (336 Kb)
  • Retrieve 3V92 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V92 from S2C, [Save to disk]
  • Re-refined 3v92 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V92 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V92
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V92, from MSDmotif at EBI
  • Fold representative 3v92 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v92_B] [3v92_A] [3v92]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3V92: [LH2 ] by SMART
  • Other resources with information on 3V92
  • Community annotation for 3V92 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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