3V96 Hydrolase Inhibitor Hydrolase date Dec 23, 2011
title Complex Of Matrix Metalloproteinase-10 Catalytic Domain (Mmp With Tissue Inhibitor Of Metalloproteinases-1 (Timp-1)
authors J.Batra, A.S.Soares, E.S.Radisky
compound source
Molecule: Metalloproteinase Inhibitor 1
Chain: A
Fragment: Unp Residues 24-207
Synonym: Erythroid-Potentiating Activity, Epa, Fibroblast C Inhibitor, Collagenase Inhibitor, Tissue Inhibitor Of Metalloproteinases 1, Timp-1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Clgi, Timp, Timp1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293e
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptttimp1

Molecule: Stromelysin-2
Chain: B
Fragment: Unp Residues 99-263
Synonym: Sl-2, Matrix Metalloproteinase-10, Mmp-10, Transin
Ec: 3.4.24.22
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mmp10, Stmy2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Mmp-10cdna
symmetry Space Group: P 21 21 2
R_factor 0.215 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
231.720 37.682 39.523 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA, PO4, ZN enzyme Hydrolase E.C.3.4.24.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMatrix metalloproteinase-10 (MMP-10) interaction with tissue inhibitors of metalloproteinases TIMP-1 and TIMP-2: binding studies and crystal structure., Batra J, Robinson J, Soares AS, Fields AP, Radisky DC, Radisky ES, J Biol Chem. 2012 May 4;287(19):15935-46. Epub 2012 Mar 16. PMID:22427646
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (3v96.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 3V96
  • CSU: Contacts of Structural Units for 3V96
  • Structure Factors (382 Kb)
  • Retrieve 3V96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V96 from S2C, [Save to disk]
  • Re-refined 3v96 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V96 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V96
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V96, from MSDmotif at EBI
  • Fold representative 3v96 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v96_A] [3v96_B] [3v96]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3V96: [NTR] [ZnMc ] by SMART
  • Other resources with information on 3V96
  • Community annotation for 3V96 at PDBWiki (http://pdbwiki.org)
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