3V96 Hydrolase Inhibitor Hydrolase date Dec 23, 2011
title Complex Of Matrix Metalloproteinase-10 Catalytic Domain (Mmp With Tissue Inhibitor Of Metalloproteinases-1 (Timp-1)
authors J.Batra, A.S.Soares, E.S.Radisky
compound source
Molecule: Metalloproteinase Inhibitor 1
Chain: A
Fragment: Unp Residues 24-207
Synonym: Erythroid-Potentiating Activity, Epa, Fibroblast C Inhibitor, Collagenase Inhibitor, Tissue Inhibitor Of Metalloproteinases 1, Timp-1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Clgi, Timp, Timp1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293e
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptttimp1

Molecule: Stromelysin-2
Chain: B
Fragment: Unp Residues 99-263
Synonym: Sl-2, Matrix Metalloproteinase-10, Mmp-10, Transin
Ec: 3.4.24.22
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mmp10, Stmy2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Mmp-10cdna
symmetry Space Group: P 21 21 2
R_factor 0.215 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
231.720 37.682 39.523 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA, PO4, ZN enzyme Hydrolase E.C.3.4.24.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMatrix metalloproteinase-10 (MMP-10) interaction with tissue inhibitors of metalloproteinases TIMP-1 and TIMP-2: binding studies and crystal structure., Batra J, Robinson J, Soares AS, Fields AP, Radisky DC, Radisky ES, J Biol Chem. 2012 May 4;287(19):15935-46. Epub 2012 Mar 16. PMID:22427646
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (3v96.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 3V96
  • CSU: Contacts of Structural Units for 3V96
  • Structure Factors (382 Kb)
  • Retrieve 3V96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V96 from S2C, [Save to disk]
  • Re-refined 3v96 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V96
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3V96, from MSDmotif at EBI
  • Fold representative 3v96 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v96_A] [3v96_B] [3v96]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3V96: [NTR] [ZnMc ] by SMART
  • Alignments of the sequence of 3V96 with the sequences similar proteins can be viewed for 3V96's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3V96
  • Community annotation for 3V96 at PDBWiki (http://pdbwiki.org)
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