3VA3 Crystal structure of RNase T in complex with a duplex DNA product (stem loop DNA with 2 nucleotide 3' overhang) date
authors Hsiao, Y.Y., Yuan, H.S.
compound source
symmetry
R_factor
R_Free 0.2904
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.71
ligand CO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • exonuclease activity
  • ribonuclease activity
  • 3'-5' exonuclease activity
  • exoribonuclease activity, pr...


  • Primary referenceHow an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes., Hsiao YY, Duh Y, Chen YP, Wang YT, Yuan HS, Nucleic Acids Res. 2012 Jun 19. PMID:22718982
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (3va3.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 3VA3
  • CSU: Contacts of Structural Units for 3VA3
  • Structure Factors (140 Kb)
  • Retrieve 3VA3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VA3 from S2C, [Save to disk]
  • Re-refined 3va3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VA3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VA3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VA3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3va3_D] [3va3_B] [3va3_A] [3va3_C] [3va3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3VA3: [EXOIII ] by SMART
  • Other resources with information on 3VA3
  • Community annotation for 3VA3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science